Helpers at the Nest Improve Late-Life Offspring Performance: Evidence from a Long-Term Study and a Cross-Foster Experiment


Public Library of Science Background Conditions during an individual’s rearing period can have far reaching consequences for its survival and reproduction later in life. Conditions typically vary due to variation in parental quality and/or the environment, but in cooperative breeders the presence of helpers adds an important component to this. Determining the causal effect of helpers on offspring fitness is difficult, since high-quality breeders or territories are likely to produce high-quality offspring, but are also more likely to have helpers because of past reproductive success. This problem is best resolved by comparing the effect of both helping and non-helping subordinates on offspring fitness, however species in which both type of subordinates commonly occur are rare. Methodology/Principal Findings We used multi-state capture-recapture models on 20 years of data to investigate the effect of rearing conditions on survival and recruitment in the cooperatively breeding Seychelles warbler (Acrocephalus sechellensis), with both helping and non-helping subordinates. The number of helpers in the rearing territory, but not territory quality, group- or brood size, was positively associated with survival of offspring in their first year, and later in life. This was not a result of group size itself since the number of non-helpers was not associated with offspring survival. Furthermore, a nestling cross-foster experiment showed that the number of helpers on the pre-foster territory was not associated with offspring survival, indicating that offspring from territories with helpers do not differ in (genetic) quality. Conclusions/Significance Our results suggest that the presence of helpers not only increase survival of offspring in their first year of life, but also subsequent adult survival, and therefore have important fitness consequences later in life. This means that when calculating the fitness benefits of helping not only short-term but also the late-life benefits have to be taken into account to fully understand the evolution of cooperative breeding. Lyanne Brouwer1,2*, David S. Richardson3,4, Jan Komdeur1,51 Animal Ecology group, Centre for Ecological and Evolutionary Studies, University of Groningen, Groningen, The Netherlands, 2 Evolution, Ecology and Genetics, Research School of Biology, The Australian National University, Canberra, Australia, 3 Centre for Ecology, Evolution and Conservation, School of Biological Sciences, University of East Anglia, Norwich, United Kingdom, 4 Nature Seychelles, Mahé, Republic of Seychelles, 5 Behavioural Ecology and Self-organisation, Centre for Ecological and Evolutionary Studies, University of Groningen, Groningen, The NetherlandsConditions during an individual’s rearing period can have far reaching consequences for its survival and reproduction later in life. Conditions typically vary due to variation in parental quality and/or the environment, but in cooperative breeders the presence of helpers adds an important component to this. Determining the causal effect of helpers on offspring fitness is difficult, since high-quality breeders or territories are likely to produce high-quality offspring, but are also more likely to have helpers because of past reproductive success. This problem is best resolved by comparing the effect of both helping and non-helping subordinates on offspring fitness, however species in which both type of subordinates commonly occur are rare.We used multi-state capture-recapture models on 20 years of data to investigate the effect of rearing conditions on survival and recruitment in the cooperatively breeding Seychelles warbler (Acrocephalus sechellensis), with both helping and non-helping subordinates. The number of helpers in the rearing territory, but not territory quality, group- or brood size, was positively associated with survival of offspring in their first year, and later in life. This was not a result of group size itself since the number of non-helpers was not associated with offspring survival. Furthermore, a nestling cross-foster experiment showed that the number of helpers on the pre-foster territory was not associated with offspring survival, indicating that offspring from territories with helpers do not differ in (genetic) quality.Our results suggest that the presence of helpers not only increase survival of offspring in their first year of life, but also subsequent adult survival, and therefore have important fitness consequences later in life. This means that when calculating the fitness benefits of helping not only short-term but also the late-life benefits have to be taken into account to fully understand the evolution of cooperative breeding.

Citation: Brouwer L, Richardson DS, Komdeur J (2012) Helpers at the Nest Improve Late-Life Offspring Performance: Evidence from a Long-Term Study and a Cross-Foster Experiment. PLoS ONE 7(4): e33167. doi:10.1371/journal.pone.0033167

Editor: Jane M. Waterman, University of Manitoba, Canada

Received: September 2, 2011; Accepted: February 10, 2012; Published: April 4, 2012

Copyright: © 2012 Brouwer et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Funding: L.B. was supported by Rubicon fellowship of the Netherlands Organisation for Scientific Research (grant no. 825.08.003) and by a Netherlands Foundation for the Advancement of Tropical Research grant (WOTRO, 84-519) awarded to J.K. This work was further supported by a Marie Curie Fellowship (HPMF-CT-2000–01074) and a NERC fellowship (NER/I/S/2002/00712) awarded to D.S.R. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

Competing interests: The authors have declared that no competing interests exist.

* E-mail: L.Brouwer@MyScience.eu

The conditions that individuals experience during the rearing period can vary due to differences in the environment and/or of the parents. Environmental effects can differ between individuals because of variation in, for example, territory quality [1], or can affect entire cohorts, for example due to bad weather in a specific year [2], [3]. Parents can affect the quality of offspring directly via the genes that the offspring inherit, but also as a result of their reproductive decisions, e.g. the trade-off between the quantity and quality of offspring [4], [5] or current and future reproduction [6]. Parents can also contribute to how the environment affects early development [7], since parents can increase provisioning when resource availability is low [8] or adjust egg size or composition which can affect offspring growth, survival or immune function [9]–[11].Until recently, it was thought that the variation in conditions that individuals experience during the rearing period would only have short-term effects on fitness components early in life. Effects of rearing conditions on fitness components later in life were expected to be overridden by environmental stochasticity accumulating during individual’s lifetime [1], and because selection on fitness components becomes weaker over the course of life [12], [13]. However, the long-term consequences of rearing conditions have now become clear [7], [14], [15] and numerous studies have shown that such conditions can have important fitness consequences later in life [1], [16]–[20]. Although the evidence for long-term fitness consequences of conditions during early development in long-lived birds is still debated (for review see: [21]).In cooperatively breeding species, individuals delay dispersal and often help to rear kin [22]. Helpers add an important component to rearing conditions as their helping behaviour has been shown to positively affect offspring survival and body weight early in life [23], [24]. Recently a number of studies have shown that helpers can have long-term benefits for the helped offspring through improving survival to maturity [25]–[27], advancing the onset of first reproduction [25], [28] or increasing lifetime reproductive success [29]. However, in long-lived species variation in lifetime fitness is best explained by the number of breeding attempts (and thus adult longevity/survival) rather than by individual differences in annual reproductive output [30], [31]. Yet, whether the presence of helpers can even affect adult survival of the helped offspring remains unknown. Positive effects of helpers on offspring performance are essential when explaining cooperative breeding through kin-selection [23], [32] or group-augmentation [33]. If helpers also affect offspring performance later in life then the calculations based on the short-term benefits will be an underestimation of fitness benefits of helping and thereby complicate our understanding on the evolution of cooperative breeding.An important difficulty in interpreting how variation in rearing conditions affects fitness is the inability to distinguish rearing effects from individual quality effects, i.e. high-quality parents might occupy high-quality territories and produce high-quality offspring, which survive better. Cross-foster experiments, in which nestlings are swapped between nests, are able to resolve this problem by separating the rearing from the (genetic) quality effects, although cross-fostering does not separate the individual (genetic) quality from territory quality. In cooperative breeders, high-quality breeders/territories are also likely to recruit more helpers because of past breeding success, resulting in, possibly pervasive, non-causal correlations between the presence of helpers and offspring fitness [22], [34]. To establish causality, the effect of helping has to be distinguished from the fact that living in a high-quality territory or a larger group (‘group augmentation’, [33]) can be beneficial itself.Several approaches have been suggested to determine causality of helping. First, experiments in which helpers were removed have shown that offspring perform less well after helper removal [35]–[37], however these experiments potentially disrupt social relationships within the group [36]. Second, a comparison of the same group with and without helpers has been suggested to determine the causality of helper effects [38], [39]. Such comparisons have been criticized as groups where helper numbers change might be a biased sample of the population [34], as changes in helper number are the result of high reproduction or low survival. However a recent study using this approach suggests that this criticism is not necessarily valid [40]. Third, it has been suggested that statistical models that incorporate the effect of territory or breeder identity as random effects may disentangle helper from quality effects [22]. However, disentangling and reliably estimating such variance components typically requires large sample sizes as well as biological factors alleviating any covariance between individual and territory quality (e.g. by breeders switching territories) [40]. Fourth, a very powerful method is to compare offspring from groups where subordinates provision with offspring from groups where subordinates do not help [41], [42], but such an approach is only applicable in species where subordinates often fail to provision, which is rare among cooperative breeders [40].Variation in rearing conditions can also affect natal dispersal patterns, for example birds of high phenotypic quality disperse when they are born in low quality habitat [43]. An important methodological consequence of such a biological phenomenon is that in studies that concern open infinite populations, unobserved dispersal outside the study population (permanent emigration) will be erroneously interpreted as mortality, and consequently effects of rearing conditions on dispersal and survival are confounded [44]–[46]. However, the effects of rearing conditions on survival and recruitment can be unambiguously determined in closed populations (i.e. no emigration).Using multistate mark-recapture analyses on 20 years of data we investigate the effect of rearing conditions on juvenile and adult survival and recruitment of Seychelles warbler (Acrocephalus sechellensis) offspring. This cooperative breeder is endemic to a few small islands in the Indian Ocean. The population on Cousin Island is a closed population, since dispersal from the island is virtually absent [47]. Although Seychelles warblers can breed independently in their first year, a lack of suitable habitat drives some males as well as females to become subordinate within their natal territory [48], [49]. Nestlings are fed for up to three months and remain in the natal territory for at least six months [50], suggesting helpers in the natal territory have ample opportunity to make substantial improvements to early life conditions of offspring. A subordinates’ decision to help is independent of territory quality (measured according to Komdeur [48]), and for female subordinates has been shown to depend on the continued presence of the primary female that raised them (the putative mother), thus assuring they gain kin-selected benefits through helping [51], [52]. A helper removal experiment has shown that helping increased reproductive success of Seychelles warblers by increasing nestling survival [53], but it is unknown whether helpers also have long-lasting positive effects on offspring fitness.Here we investigate the long-term effect of conditions during the rearing period upon subsequent juvenile and adult survival and the probability of being recruited into a breeding position. We considered territory quality, group size, brood size and the number of helping and non-helping subordinates in the rearing territory as potential key aspects of conditions during the rearing period. Previous analyses have shown that natal territory quality and natal group size do not affect juvenile survival [54]. We first explore the association between rearing conditions and offspring survival and recruitment. By investigating both the number of helping and non-helping subordinates we will be able to test whether associations are due to causal effects of helping or correlated effects through group size. Furthermore, we will use data from a cross-fostering experiment of nestlings [55] to distinguish rearing from genetic (quality) effects. We do this by comparing the effects of the conditions in the original (pre-foster) territories to those of the rearing territories. If any effects of rearing conditions on survival or recruitment are the result of a causal relationship, we would expect an association between conditions of the rearing territories, and not of the original territories, on the performance of cross-fostered offspring.The work has been conducted under the proper legislation of the Seychelles law; the Department of Environment and the Seychelles Bureau of Standards gave permission for fieldwork and sampling (approval reference A0347). Our work also complied with all the ethical conditions set out by the European institutions involved (University of Groningen & University of East Anglia).Data were collected as part of the long term study of the Seychelles warbler population on Cousin Island (04°20’S, 55°40’E) from 1986 to 2006 [55], [56]. See Table 1 for a summary of years in which specific data was collected. During the main breeding season (July to September), and in some years during the minor breeding peak (January to March), each territory was checked for the presence of birds and breeding activity [48], [54]. We assigned the status of all birds in the population. The ‘primary’ male and female were defined as the pair-bonded male and female in the territory. All other adult birds resident in the territory were defined as ‘subordinate’ [57]. Nests were observed throughout the breeding cycle. Most Seychelles warblers produce one clutch per season and this normally consists of just one egg, but about 20% of nests contain two or three eggs [58]. Parentage analysis has shown that egg dumping does not occur, however, joint-nesting is common with 44% of subordinate females producing offspring. Moreover, 40% of offspring are the result of extra-group paternity (sired by a male from outside the social group) [58]. Birds were either ringed as nestlings or as fledglings while still resident in the natal territory and dependent on their parents (birds of known age and origin), or later when independent (birds of unknown age and origin). Birds were ringed with a unique combination of three colour rings and a British Trust for Ornithology ring and since 1993 all birds were blood-sampled.thumbnail

Table 1. Summary showing the years in which specific data was collected to investigate the effects of early conditions on survival of Seychelles warblers between 1986–2006.

doi:10.1371/journal.pone.0033167.t001 Molecular sexing [59] was used to determine the sex of each individual sampled since 1993. Before that birds were sexed based on observations and biometry at 6 months of age [60]. Consequently, by including only birds of known sex, juvenile survival before 1993 will likely be overestimated (as for the earlier period it will only include birds that reached 6 months of age). However, here we are interested in the long-term effects of rearing conditions, i.e. their effect on adult survival and recruitment.Rearing conditions were defined as the conditions (i.e. group size, territory quality etc.) in the rearing territory during the breeding season the bird hatched. Group size is defined as the number of independent birds resident in the territory. Seychelles warblers are insectivorous, taking 98% of their insect food from leaves, therefore an index of territory quality was calculated using the number of insect prey available, territory size and foliage cover following the methods in Komdeur [48]. Territory quality was calculated for each territory in 1987, 1990, 1996–1999 and 2003–2006. The territories are very static in space (Brouwer, Richardson & Komdeur pers. obs.) and the number of territories varies little over time (number of territories: 112.3±1.2 S.E., n = 15 years). Consequently, for the remaining years, territory quality for each territory was calculated as the average from the preceding and following period [54].Additional data on rearing conditions was available for the cohorts 1997–1999 and 2002–2005 (n = 327). For these cohorts brood size was available and group size was specified as the number of helping and non-helping subordinates. During the nestling provisioning stage a minimum of two 90-minute observations (1 week apart and randomized with respect to time of day) were completed at each nest to asses whether a subordinate was helping or not [49]. A subordinate was defined as ‘helper’ when it provisioned nestlings whereas ‘non-helpers’ were never observed provisioning. Females and males are as likely to act as helper [61], but joint nesting females (female subordinates laying an egg) might have wrongly been assigned as helper in this study (since a full pedigree is not yet available). However, our main interest lies in how additional helping behaviour affects offspring fitness.To disentangle the effects of rearing conditions and (genetic) quality on long-term fitness, we investigated survival and recruitment of 69 same age (±2-day difference) nestlings that were cross-fostered between 0 and 6 days of age for the cohorts 1997–1999. Nests with two or three nestlings (n = 11) were reduced to one by moving two or three nestlings to another nest, but provisioning rates have been shown to be independent of the number of nestlings [51].We constructed the capture-resighting histories of 1047 marked birds that were monitored between 1986 and 2006. Of these, 499 were ringed as nestling or fledgling (known age and territory). Although birds ringed as adults do not provide any direct information about effects of rearing conditions, they were included in the analyses to improve the estimation of parameters that were independent of rearing conditions and thereby indirectly improve the accuracy of parameters of key interest. The capture-resighting histories were included in one combined model, using multistate mark-recapture models based on resightings (e.g. [62]). Survival, resighting and transition probabilities between the states of ‘fledgling’, ‘old fledgling’, ‘subordinate’ and ‘primary’ were estimated according to Figure 1. Since offspring have never been observed to help or breed before six months of age [50] they can be considered as juveniles in two consecutive periods in years where both the major and minor breeding peaks are monitored. To include this in the multistate model, the first year of life was divided into two states: ‘fledgling’ and ‘old fledgling’. After the first year of life ‘old fledgling’ birds subsequently become ‘subordinate’, recruit to a ‘primary’ (breeding) position, or die. The transition probabilities from fledgling to old fledgling, and from old fledgling to subordinate were fixed to one, as all fledglings and old fledglings move to the next state, conditional that they survive (Figure 1). Twenty-nine out of 1047 birds in our dataset lost their ‘primary’ status and became ‘subordinate’ again. Although this is an interesting phenomenon [63], we did not include these birds in our sample as we are primarily interested in recruitment here. Consequently, the transition from ‘primary’ to ‘subordinate’ was constrained to zero (Figure 1).thumbnail

Figure 1. Schematic overview of the life cycle of the Seychelles warbler.

The four main life stages: fledgling (F), old fledgling (O), subordinate (S) and primary (P) with the survival (F) and transition (?) parameters as estimated in the multistate capture-recapture model as a function of covariates of the rearing and original (pre-foster) territory. (c) = cross-fostered, (nc) = non-cross-fostered. After the first year of life ‘old fledgling’ birds subsequently become ‘subordinate’, recruit to a ‘primary’ (breeding) position, or die. The transition probabilities from fledgling to old fledgling, and from old fledgling to subordinate were fixed to one, as all fledglings and old fledglings move to the next state, conditional that they survive.doi:10.1371/journal.pone.0033167.g001 Each year, except for 1992, individuals were recorded as present if observed in the last two weeks of the main breeding season (1 July–1 September). Furthermore, for 1998, 1999, 2004 and 2005 the minor breeding peak (1 January–1 March) was monitored. The biannual re-sighting periods allow us to estimate survival over two 6-month periods, for the remaining years we could only calculate survival over the whole year. If no capture-resighting data were available for the minor breeding season, dummy variables were created by including zeros in the encounter histories and adjusting the time interval, with the survival parameter (F) set to 1 and the resighting parameter (recapture, p) and transition parameter (?) set to 0 [54]. A total of 58 birds that were translocated in 2004 [56] were removed from the dataset from that moment on (i.e. treated as right censored). Individuals’ re-sighting histories were used as input files for survival analyses in the program MARK [64].We employed an a priori approach in which a small set of candidate models was created based on previous knowledge and hypotheses of interest. Previous analyses have shown that annual survival was high, both for juveniles (first year) (0.61) and adults (0.84), and did not differ between the sexes [54]. The basic model structure we use here (Table 2, model 3) allowed survival to vary between years and states, with different survival probabilities for individuals in their first year of life (fledgling and old fledgling state) than for older birds (subordinate and primary state). We expected the resighting probability to be highest for primary birds, because they remain in the same territory after settling, in contrast to subordinates which make forays around the island in search for a vacancy [65]. To simplify and avoid the over-parameterisation of our model we assumed time-independent resighting rates but allowed them to vary between the primary and the other states. Our basic model structure allowed transition (recruitment) probabilities to vary over time and between the sexes. In addition, three groups were created in the analyses, one group for birds of known age and origin, one group for cross-fostered (also known age and origin) offspring, and one group for the birds of unknown age and origin. For each year that data was available, conditions of the rearing territory were included as individual covariates in the analyses for both the cross-fostered birds and for birds of known age and origin. However, the individual covariates describing the conditions of the original territory (pre-fostering) were included for the cross-fostered birds only. Since previous analyses have shown that local density negatively affected adult survival [54], the average group size a bird lived in from its second year on was included as a covariate on adult survival when testing for the effects of the rearing conditions.thumbnail

Table 2. Results of a multistate model examining survival (F), resighting (p) and recruitment probabilities (transition from subordinate to primary state, ?SP) for Seychelles warblers (n = 1018) from 1986 to 2006.

doi:10.1371/journal.pone.0033167.t002 We first investigated whether the probability of resighting or survival varied between birds in the different states and checked whether the recruitment rate differed between the sexes. We then investigated whether survival and recruitment were associated with conditions during the rearing period for both the cross-fostered birds and the other birds of known age and origin. Finally, we investigated whether we can distinguish rearing conditions from (genetic) quality effects by including conditions of the original (pre-fostering) territory for cross-fostered offspring only.Model selection was based on Akaike’s Information Criterion (AICc) corrected for sample size with better fitting models resulting in lower AICc values [66], but models with ?AICc <2 are considered to be approximately equally well supported. Additionally, we report the normalized Akaike weights to assess the relative support for competing models [67]. Estimating the amount of overdispersion using the median c-procedure implemented in program MARK [68] showed some evidence for overdispersion (variance inflation factor c = 1.51±0.02). Consequently, AICc values were adjusted to allow for the extent of overdispersion measured by c, through quasi likelihood (QAICc).On average 39% of the territories (average total number of territories on Cousin Island = 112.3±4.6 S.D.) had one or more subordinates in a given year. The nest observation data showed that group sizes varied from 2 to 6 birds, with a maximum of two helping (mean = 0.29±0.52 S.D.) and two non-helping (mean = 0.53±0.70 S.D.) subordinates observed per territory (groups of 7 birds exist but are rare and were not part of this dataset). The index of territory quality revealed that higher quality territories did not have more helpers, nor non-helpers, than lower quality territories (GLMM, response variable territory quality with territory identity as random effect, n = 1117, helpers: = 0.87, P = 0.35; non-helpers, = 0.31, P = 0.58). However, there could be other aspects associated with the presence of subordinates not accounted for in the territory quality calculation.We investigated whether survival, recruitment and resighting probabilities differed between individuals in the different states (Figure 1). Annual resighting probabilities were similarly high for first year birds (fledglings and old fledglings) as subordinates (0.83±0.02 S.E.), but even higher for primary birds (0.97±0.01 S.E.; Table 2, model 3 vs. 5). There was no evidence that survival probabilities differed between subordinates and primaries (Table 2, model 3 vs. 4). Annual recruitment probabilities varied between 0.15 and 0.79 (average = 0.60±0.04 S.E.). There was no evidence for differential recruitment between the sexes (Table 2, model 1 vs. 2; ß = -0.002±0.21), and this did not change between years (Table 2, model 1 vs. 3). A model with equal recruitment probabilities for both sexes was 2.8 times better supported by the data than a model with sex-specific recruitment (Table 2, model 1 vs. 2). Consequently model 1 (Table 2) was used as a starting model to investigate the effects of conditions during the rearing period on survival and recruitment.We found that the number of helpers in the rearing territory (of both cross-fostered and non-cross fostered offspring) was positively associated with survival (Table 3a, model 1 vs. 3), and that this effect did not vary between years (Table 3a, model 11) or with territory quality (Table 3a, model 4 vs. 1). Specifically, the number of helpers in the rearing territory was not only positively associated with survival in the first year of life but also later in life, as there was no evidence that the effect varied between the fledgling/old fledgling state versus the subordinate and primary states (Table 3a, model 1 vs. 2; Figure 2a). Including the number of helpers in the rearing territory as a covariate with survival was 3.8 times better supported by the data than a model without this effect (Table 3a, model 1 vs. 3). This effect was due to the presence of helpers itself as there was no evidence that the number of non-helping subordinates (Table 3a, models 5 and 8 vs. 3; Figure 2b), or group size (helping and non-helping subordinates; Table 3a, model 10 vs. 3) in the rearing territory was associated with juvenile or adult survival. Including the number of non-helping subordinates as a quadratic effect did not improve the fit of the model (Table 3a, model 7 vs. 5). Brood size and territory quality of the rearing territory were also not associated with survival (Table 3a, models 6 and 9 vs. 3).thumbnail

Figure 2. Annual adult and juvenile survival of Seychelles warblers.

Survival probabilities (with S.E.) and model predictions for an average year are given in relation to a) the number of helpers in the rearing territory (predictions based on model 1, Table 3a), b) the number of non-helpers in the rearing territory (predictions based on model 5, Table 3a) and c) the number of helpers in the original (pre-foster) territory of cross-fostered offspring (predictions based on model 3, Table 4a). Numbers on top indicate number of offspring followed.doi:10.1371/journal.pone.0033167.g002 thumbnail

Table 3. Results of a multistate model examining conditions during the rearing period on (a) survival (F) and (b) recruitment (transition from subordinate to primary state, ?SP) of Seychelles warblers.

doi:10.1371/journal.pone.0033167.t003 The probability of recruitment to the primary state was not higher for birds reared on a territory with helpers (Table 3b, model 3 vs. model 1). Furthermore, recruitment probabilities were not associated with territory quality, the number of non-helpers or the size of the group or brood in which they were reared (Table 3b).The association between the number of helpers in the territory and offspring survival was not a result of a non-causal relationship caused by (genetic) quality; the cross-foster experiment showed that the number of helpers of the original (pre-foster) territory was not associated with either survival (Table 4a, model 3 vs. 1) or recruitment probabilities (Table 4b, model 1 vs. 2). Furthermore, none of the other characteristics of the original territory i.e. group size, territory quality, brood size and the number of non-helpers were associated with survival or recruitment of the cross-fostered offspring (Table 4). This null-result was not likely caused by a lack of power as there was a positive association between the number of helpers in the foster territory and both juvenile and adult survival for the cross-fostered offspring (Table 4a, model 1 vs. 2). Although QAICc increased by only 1.8, including the number of helpers in the foster territory was 2.4 times better supported by the data than a model without this effect (Table 4a, model 1 vs. 2).thumbnail

Table 4. Results of a multistate model examining the effects of the original (pre-foster) territory conditions on (a) survival and (b) recruitment probabilities (transition from subordinate to primary state, ?SP) of cross-fostered Seychelles warblers (n = 69).

doi:10.1371/journal.pone.0033167.t004 Our results suggest that the presence of helpers has long-term effects on the offspring they help; the number of helpers in the rearing territory was not only associated with juvenile survival, but also with the later adult survival of the helped offspring. The evidence suggest that offspring benefited from being helped, rather than just the presence of other group members, as the number of non-helping subordinates was not associated with survival. Furthermore, the positive association between helper numbers and survival was not a non-causal result of offspring of groups with helpers being of higher (genetic) quality since the presence of helpers on the original (pre-foster) territory was not associated with offspring survival. These findings mean that not only the short-term but also the long-term benefits have to be taken into account to fully understand the evolution of cooperative breeding. Potentially other factors not accounted for here, like age and breeding experience, differ between groups with helpers versus groups with non-helping subordinates and result in differences in offspring survival. Although previous work has shown that age and breeding experience do affect reproductive success, access to food and foraging efficiency has been shown to be similar between older/more experienced and younger birds [69], [70]. It is therefore unlikely that age or breeding experience caused differences in survival after fledging.Evidence that helpers can have short-term effects on offspring fitness by increasing juvenile survival has previously been shown, for example through removal experiments in several cooperatively breeding species [35]–[37], [71]. However whether helping has long-term fitness benefits has long remained unclear, reflecting the fact that helper effects are hard to study, not only because long-term data are needed, but also since specific approaches (e.g. comparing helping and non-helping subordinates) are required to determine the direction of causation [22]. Furthermore, parents might respond to the presence of helpers by reducing their investment in their offspring, making it even harder to detect helper effects as shown, for example, in a study on superb-fairy wrens (Malurus cyaneus) where mothers breeding in the presence of helpers lay smaller eggs of lower nutritional content that produce lighter chicks, as compared with those laying eggs in the absence of helpers [72]. In studies that have shown long-term effects of helping the benefit was mediated through increased mass or size at independence, which resulted in higher survival to maturity or younger age of first reproduction [25]–[29]. We have now shown that helping can even affect the adult survival of the helped offspring. It is likely, and logical, that the increased survival of Seychelles warblers may also be linked to higher body mass of the helped offspring at fledging as a result of the provisioning provided by helpers. However, helpers could also reduce the need for offspring to forage, which in turn could lead to reduced physiological damage like reduced oxidative stress [73], something that will be investigated in the future.In the Seychelles warbler, the presence of helpers during the rearing period positively affects survival during the nestling stage [53], and also later in life, but did not result in a higher likelihood of recruiting to a breeder position (this study). A removal experiment indeed showed that the proximity to a vacant breeding position, rather than body size, was the main determinant of the chance of claiming a vacancy [74]. Nevertheless, since many individuals will not obtain a breeding position upon reaching adulthood, increasing one’s adult survival will also increase one’s likelihood of reproduction via joint-laying or extra-pair paternity as well as eventually obtaining a breeding vacancy. Although having helpers in a group therefore seems very beneficial for the future survival of the offspring, living in larger groups later in life becomes a disadvantage as this results in lower survival [54], most likely acting via competition for food [56]. This might explain why the presence of more than one helper is uncommon in this species (average no. of helpers per territory = 0.29±0.52 S.D.).Neither brood size nor territory quality experienced during the rearing period was associated with survival at any stage of an individuals’ life. A previous study on the Seychelles warbler has already shown that although there was variation in juvenile survival between seasons, this did not affect a cohorts’ adult survival probability [54]. The long period in which the Seychelles warbler offspring are dependent on their parents might counterbalance any negative effects experienced during early life. Our results suggest that there is a direct effect of the additional care, probably as a result of the extra provisioning gained by young. Furthermore, a previous analysis found evidence for maternal effects, as maternal heterozygosity at microsatellite loci was positively associated with offspring survival [55], [75]. It is possible that parental effects are, therefore, a more important source of variation in quality than the effects of the environment and territory. The Seychelles warbler lives in a relatively stable tropical environment and birds time their reproduction to periods with high food availability and choose whether to lay one or two eggs [76]. With such a strategy, adverse conditions might be avoided. Although studies on temperate species might show greater effects of rearing conditions, in tropical species with less variation in the environmental conditions, parental effects and decisions might be more important.Primary birds did not have lower survival probabilities than subordinates, which at first sight suggest there is little cost associated with reproduction itself. However, the assessment of status was based on observations only. A previous study showed that 44% of subordinate females are joint nesting each year [77], therefore they may also suffer any cost of reproduction. Furthermore, subordinates may have been investing considerable effort in helping. Unfortunately, we could not differentiate helper and non-helper survival as the minor breeding peak was monitored in a few years only, drastically reducing our sample size with respect to knowledge about whether a bird has helped or not. Finally, it might be that heterogeneity in quality between individuals, or condition dependence, allows certain individuals to reproduce without bearing the cost of reduced survival [78].Nature Seychelles kindly allowed us to work on Cousin Island. The Department of Environment and Seychelles Bureau of Standards gave permission for fieldwork and sampling. We thank all the very many people who assisted with data collection since 1985. Martijn van de Pol provided helpful comments on the manuscript.Analyzed the data: LB. Contributed reagents/materials/analysis tools: LB DSR. Wrote the paper: LB. Conceived and designed the cross-foster experiment: DSR JK. Performed the cross-foster experiment: DSR. 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Find this article online Richardson DS, Jury FL, Blaakmeer K, Komdeur J, Burke T (2001) Parentage assignment and extra-group paternity in a cooperative breeder: the Seychelles warbler (Acrocephalus sechellensis). Mol Ecol 10: 2263–2273. Find this article online Cam E, Monnat JY (2000) Apparent inferiority of first-time breeders in the kittiwake: the role of heterogeneity among age classes. J Anim Ecol 69: 380–394. Find this article online Please follow our guidelines for notes and comments and review our competing interests policy. Comments that do not conform to our guidelines will be promptly removed and the user account disabled. The following must be avoided: Remarks that could be interpreted as allegations of misconductUnsupported assertions or statementsInflammatory or insulting languageYou must be logged in to add a note to an article. You may log in by clicking here or cancel this note. You cannot annotate this area of the document. 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Shionogi-ViiV Healthcare Announces Initial Data from Pivotal Phase III Study of Dolutegravir in HIV


SPRING-2 study meets primary endpoint of non-inferiority of dolutegravir compared to raltegravir over 48 weeks in treatment-naive HIV patients
LONDON, April 2, 2012 /PRNewswire/ — ViiV Healthcare and Shionogi & Co., Ltd. today announced that initial results have been received from the SPRING-2 (ING113086) Phase III study of the investigational integrase inhibitor dolutegravir in treatment-naive adults with HIV-1. The study met its primary objective, demonstrating non-inferiority of dolutegravir to raltegravir. Through 48 weeks, 88% of study participants on dolutegravir were virologically suppressed (<50 copies/mL) vs. 85% of participants on raltegravir [with a 95% confidence interval (CI) for the difference, -2.2% to + 7.1%; the lower end of the CI (-2.2%) was above the prespecified -10% non-inferiority limit].

SPRING-2 is an ongoing non-inferiority study designed to compare the efficacy and safety of dolutegravir 50mg administered once-daily versus raltegravir 400mg administered twice daily, both with two nucleoside reverse transcriptase inhibitors (NRTIs); 411 treatment-naive study participants were randomized in each arm. The primary endpoint of the study was the proportion of study participants with undetectable HIV-1 RNA (<50c/mL) through 48 weeks.  The tolerability of dolutegravir was similar to that of raltegravir, with rates of adverse events leading to withdrawal at 2% in both arms. Drug-related nausea was reported by 10% of patients in each arm; no other adverse events related to study medication were reported by more than 5% of participants in either arm.

“The SPRING-2 findings indicate that once daily unboosted dolutegravir may offer people living with HIV an additional treatment option in the future. These are the first large-scale safety and efficacy data in naive patients, and we look forward to seeing further data in 2012 to build a more comprehensive picture of the role of dolutegravir,” said Dr John Pottage, Chief Medical Officer, ViiV Healthcare.

“At ViiV Healthcare we have a total focus on the needs of people living with HIV, and as a result we see the continued need for new, effective and convenient therapies.  We are committed to building connections and collaborations, like the Shionogi-ViiV Healthcare dolutegravir program, to meet these needs,” said Dr. Dominique Limet, Chief Executive Officer, ViiV Healthcare.

“The SPRING-2 study has met its primary endpoint for dolutegravir in treatment-naive patients.  This marks an important milestone for the development of dolutegravir and the Shionogi-ViiV Healthcare joint venture. We look forward to completing further Phase III studies in a variety of clinical settings in order to fully understand the potential clinical benefit for a range of HIV patient populations,” said Dr. Tsutae “Den” Nagata, Chief Medical Officer, Shionogi & Co., Ltd.

Full results of this study, including the full results of the secondary endpoints, will be presented at an upcoming scientific meeting.  SPRING-2 is the first of four Phase III studies that are due to be reported in 2012. Data from the clinical trials SINGLE (ING114467), VIKING-3 (ING112574) and SAILING (ING111762), will be received throughout the year and will allow further determination of the profile of dolutegravir.  These studies are designed to support a future regulatory file for dolutegravir.

About SPRING-2
SPRING-2 (ING113086) is a Phase III, randomized, double-blind, multicentre, parallel group, non-inferiority study. The study included 822 HIV-1 infected treatment-naive participants. The study compares the efficacy and safety of dolutegravir and raltegravir as part of an overall treatment regimen; both treatment arms are administered with investigator-selected dual nucleoside reverse transcriptase inhibitor therapy (either abacavir + lamivudine or tenofovir + emtricitabine).

The primary objective for SPRING-2 is to demonstrate the antiviral activity of dolutegravir 50mg administered once-daily compared to raltegravir 400mg administered twice daily over 48-weeks. Secondary objectives include the assessment of antiviral activity of dolutegravir compared to raltegravir at 96-weeks, to compare the tolerability, long-term safety and antiviral and immunologic activity of dolutegravir to raltegravir and to evaluate viral resistance in study participants experiencing virological failure.

About Dolutegravir
S/GSK1349572 (dolutegravir) is an investigational integrase inhibitor (INI) currently in development by Shionogi-ViiV Healthcare LLC for the treatment of HIV. It is currently the only once-daily, unboosted INI in Phase III clinical development. Integrase inhibitors block HIV replication by preventing the viral DNA from integrating into the genetic material of human immune cells (T-cells). This step is essential in the HIV replication cycle and is also responsible for establishing chronic infection. Given the stage of development of this investigational HIV therapy, the full picture of the efficacy and safety of dolutegravir has not been conclusively determined.

About Shionogi-ViiV Healthcare LLC
The Shionogi-ViiV Healthcare LLC is a joint venture between Shionogi & Co., Ltd. and ViiV Healthcare Ltd., a global company with a sole focus on HIV established in 2009 by GlaxoSmithKline and Pfizer, Inc.  Dolutegravir is the lead compound in the Shionogi-ViiV Healthcare LLC partnership. Shionogi-ViiV Healthcare LLC is also developing another integrase inhibitor which is at an earlier stage of development.

About Shionogi & Co., Ltd
Headquartered in Osaka, Japan, Shionogi & Co., Ltd. is a major research-driven pharmaceutical company dedicated to placing the highest value on patients. Shionogi’s Research and Development currently targets three therapeutic areas: Infectious Diseases, Pain, and Metabolic Syndrome. The Company is the originator of innovative medicines which have been successfully delivered to millions of patients worldwide. In addition, Shionogi is engaged in new research areas such as allergy and cancer. Contributing to the health of patients around the world through development in these therapeutic areas is Shionogi’s primary goal. For more details, please visit http://www.shionogi.co.jp. For more information on Shionogi Inc. headquartered in Florham Park, NJ, please visit http://www.shionogi.com.

About ViiV Healthcare
ViiV Healthcare is a global specialist HIV company established in November 2009 by GlaxoSmithKline (LSE: GSK) and Pfizer (NYSE: PFE) dedicated to delivering advances in treatment and care for people living with HIV. The company’s aim is to take a deeper and broader interest in HIV/AIDS than any company has done before and take a new approach to deliver effective and new HIV medicines as well as support communities affected by HIV. For more information on the company, its management, portfolio, pipeline and commitment, please visit http://www.viivhealthcare.com.

GlaxoSmithKline Cautionary statement regarding forward-looking statements
Under the safe harbor provisions of the U.S. Private Securities Litigation Reform Act of 1995, GSK cautions investors that any forward-looking statements or projections made by GSK, including those made in this announcement, are subject to risks and uncertainties that may cause actual results to differ materially from those projected. Factors that may affect GSK’ s operations are described under ‘Risk factors’ in the ‘Financial review & risk’ section in the company’s Annual Report 2011 included as exhibit 15.2 to the company’s Annual Report on Form 20-F for 2011.

Pfizer disclosure notice: Pfizer assumes no obligation to update any forward-looking statements contained in this release as a result of new information or future events or developments.  This release contains forward-looking information about Pfizer, GlaxoSmithKline and ViiV Healthcare and about the prospects of the companies, including revenues from in-line products and the potential benefits of product candidates that will be contributed to that company, as well as the potential financial impact of the transaction. Such information involves substantial risks and uncertainties including, among other things, decisions by regulatory authorities regarding whether and when to approve any drug applications that have been or may be filed for such product candidates as well as their decisions regarding labeling and other matters that could affect the availability or commercial potential of such product candidates; and competitive developments.

A further list and description of risks and uncertainties can be found in Pfizer’s Annual Report of Form 10-K for the fiscal year ended December 31, 2011 and in its reports on Form 10-Q and Form 8-K.

Shionogi forward-looking statement: This announcement contains forward-looking statements. These statements are based on expectations in light of the information currently available, assumptions that are subject to risks and uncertainties which could cause actual results to differ materially from these statements. Risks and uncertainties include general domestic and international economic conditions such as general industry and market conditions, and changes of interest rate and currency exchange rate. These risks and uncertainties particularly apply with respect to product-related forward-looking statements. Product risks and uncertainties include, but are not limited to, completion and discontinuation of clinical trials; obtaining regulatory approvals; claims and concerns about product safety and efficacy; technological advances; adverse outcome of important litigation; domestic and foreign healthcare reforms and changes of laws and regulations. The company disclaims any intention or obligation to update or revise any forward-looking statements whether as a result of new information, future events or otherwise. This announcement contains information on pharmaceuticals (including compounds under development), but this information is not intended to make any representations or advertisements regarding the efficacy or effectiveness of these preparations nor provide medical advice of any kinds.

SOURCE Shionogi-ViiV Healthcare LLC

Posted: April 2012

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Conservatives Losing Trust in Science, Study Finds


Politically conservative Americans have lost trust in science over the last 40 years while moderates and liberals have remained constant in the stock they put in the scientific community, a new study finds.

The most educated conservatives have slipped the most, according to the research set to appear in the April issue of the journal American Sociological Review. The change in conservative attitudes likely has to do both with changes in the conservative movement and with changes in science’s role in society, said study author Gordon Gaulet, a postdoctoral researcher at the University of North Carolina, Chapel Hill.

“There’s been this need to cultivate conservative ideas in reaction to what is perceived as mainstream culture, which a lot of conservatives would suggest is biased toward secular liberalism,” Gaulet told LiveScience. “Part of what being a conservative means is looking for alternatives for mainstream ideas and bases of knowledge, and science and the media are those.” [Life’s Extremes: Democrats & Republicans]

Science and politics

The trouble with assessing the public’s opinion of science over time is that few public opinion polls asked questions about trust in science before the 1980s. One major survey, the General Social Survey, did ask Americans about their trust in the scientific community starting in 1974, however.

Gaulet used this survey, which was conducted annually until 1994 and every other year through 2010, to gauge changes in different groups’ trust in science over time. He found that overall, trust in science is not especially high — fewer than half of Americans surveyed over the time frame reported a “great deal” of trust in the scientific community.

Liberals had the most trust in science as a whole over the survey period (1974 to 2010), with 47 percent reporting a “great deal” of trust on average, while moderates were the most consistently skeptical of science, with 42 percent trusting the scientific community a great deal. (The moderates in the survey tended to have the least understanding of science as any group, possibly explaining the finding, Gaulet said.) An average of 43 percent of conservatives said they trusted scientists a great deal over the study period.

But only conservatives showed a change over time. At the beginning of the survey, in the 1970s, conservatives trusted science more than anyone, with about 48 percent evincing a great deal of trust. By 2010, the last year survey data was available, only 35 percent of conservatives said the same.

What’s changed?

Gaulet said that conservatism itself has changed, with a greater emphasis on conservative thought and think tanks such as The Heritage Foundation that make a point of challenging the scientific community. The finding wasn’t the result of conservatives being less educated than in the old days, he said. In fact, the decline in trust was most obvious among conservatives with a bachelor’s degree or higher. [The World’s Greatest Minds]

Meanwhile, science has changed, too. Research used to be done under the auspices of NASA and the Department of Defense, Gaulet said. Both of these agencies seemed far-removed from daily life. However, over the decades, science has become more intertwined with everyday policy. The Environmental Protection Agency is a “poster child” for science informing real-world regulation that some conservatives oppose, Gaulet said.

“It’s almost a contradiction,” he said. “We use science because it has this objective point of view or credibility to figure out which policy to use … but by doing that it becomes politicized.”

Interestingly, public opinion on science in Europe and Japan skews differently than in the United States, Gaulet said. There, skepticism about the scientific community usually comes from the left. The reason may be that the issues on the scientific forefront in Europe (genetically modified food, nuclear power) tend to push liberals’ buttons, while those in the United States (climate change, stem cell research) tend to bother conservatives more. 

Gaulet doesn’t favor pulling science out of the public sphere, in fact preferring that scientists be even more outspoken about their research. But they should be prepared for pushback.

“I think this is the new reality,” he said. “If we want science to be a major part of our culture, and our political culture, then [politicization] is going to be a potential problem.”

You can follow LiveScience senior writer Stephanie Pappas on Twitter @sipappas. Follow LiveScience for the latest in science news and discoveries on Twitter @livescience and on Facebook.

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Study: Our ancestors used fire a million years ago


NEW YORK (AP) — When did our ancestors first use fire? That’s been a long-running debate, and now a new study concludes the earliest firm evidence comes from about 1 million years ago in a South African cave.

The ash and burnt bone samples found there suggest fires frequently burned in that spot, researchers said Monday.

Over the years, some experts have cited evidence of fire from as long as 1.5 million years ago, and some have argued it was used even earlier, a key step toward evolution of a larger brain. It’s a tricky issue. Even if you find evidence of an ancient blaze, how do you know it wasn’t just a wildfire?

The new research makes “a pretty strong case” for the site in South Africa’s Wonderwerk Cave, said Francesco Berna of Boston University, who presents the work with colleagues in the Proceedings of the National Academy of Sciences.

One expert said the new finding should be considered together with a previous discovery nearby, of about the same age. Burnt bones also have been found in the Swartkrans cave, not far from the new site, and the combination makes a stronger case than either one alone, said Anne Skinner of Williams College in Williamstown, Mass., who was not involved in the new study.

Another expert unconnected with the work, Wil Roebroeks of Leiden University in The Netherlands, said by email that while the new research does not provide “rock solid” evidence, it suggests our ancestors probably did use fire there at that time.

The ancestors probably brought burning material from natural blazes into the cave to establish the fires, said Michael Chazan of the University of Toronto, a study author. Stone tools at the site suggest the ancestors were Homo erectus, a species known from as early as about 2 million years ago.

The scientists didn’t find signs of fire preparation, like a hearth or a deep pit. But Berna said it’s unlikely the fires were simply natural blazes, such as from lightning strikes.

That’s because the evidence shows repeated fires burned deep inside the cave, he said. The cave entrance is almost 100 feet away, and because of changes in the cave over the past 1 million years, the entrance was apparently even farther away when the fires burned, he said. In contrast, he said, the bones at Swartkrans could have been burned by a natural fire in the open before winding up in that cave.

The scientists also found no sign that the Wonderwerk cave fires were ignited by spontaneous combustion of bat guano, which they called a rare but documented event.

Berna and colleagues describe animal bones that show discoloring and a chemical signature of being heated. They also report microscopic bits of ash in excavated dirt from the cave, indicating burning of light material like leaves, grasses and twigs. And they found evidence of heating in samples of fractured stone.

Several lines of evidence suggest the material was heated within the cave rather than blown or washed in from outside.

It’s not clear what the fires were used for. While the burnt bones suggest cooking, the ancestors might have eaten the meat raw and tossed the bones into the fire, Berna noted. Other possible uses might be warmth, light and protection from wild animals, he said.

In a statement to The Associated Press, Roebroeks and Paola Villa of the University of the Witwatersrand in Johannesburg, South Africa, and the University of Colorado Museum in Boulder, said that while the new study probably demonstrates use of fire, they’d like to see signs of preparations like a hearth to be sure.

In any case, they said, the work does not show that human ancestors were using fire regularly throughout their range that long ago. In a paper published last year, they traced such habitual use of fire to about 400,000 years ago.

Berna said researchers will return to the Wonderwerk cave this summer and pursue hints that fires were used there even earlier than their paper suggests.

___

Online:

Journal website: http://www.pnas.org

Wonderwerk Cave information: http://bit.ly/H4sDS4

___

Malcolm Ritter can be followed at http://www.twitter.com/malcolmritter

View the original article here

‘Faster-Than-Light’ Study Coordinator Resigns


The media and scientific ripples after a shocking announcement that physicists had detected particles seeming to travel faster than light have culminated with the project’s coordinator, Antonio Ereditato, stepping down, announced Italy’s National Institute of Nuclear Physics (INFN) Friday (March 30).

In September, baffled physicists from the OPERA collaboration announced that they had sent beams of particles called neutrinos from the CERN laboratory, in Geneva, to a detector buried underground 454 miles (730 kilometers) away in Gran Sasso, Italy, finding that the neutrinos arrived 60 billionths of a second sooner than light would have.

The speed of light is thought to be a cosmic speed limit imposed by Einstein’s special theory of relativity. The OPERA scientists were as surprised as anyone by the anomaly they detected, inviting other researchers to scrutinize their results and recreate the experiment to help prove or disprove “faster-than-light” findings.

Just this month, results from one such independent version of the original OPERA experiment suggested the neutrinos were traveling at sub light speed. This ICARUS experiment suggested, as others had suspected, the shocking anomaly was an artifact of the measurement itself.

The process that ensued since the shocking announcement is exactly what should happen in the scientific process, Ereditato noted.

“It is a matter of record that we detected and announced the existence of two subtle instrument-related effects that can either totally or partially explain the anomaly,” he said in an editor’s note posted online today (March 30) by Le Scienze.”The words ‘errors,’ ‘mistakes’ and ‘flop’ were bandied about regarding what in actual fact is standard scientific procedure in experimental work.”

But tensions seem to have reached a threshold, Ereditato said in his statement.

He said because of the large amount of media interest, “”the OPERA Collaboration found itself under anomalous and in some respects irregular pressure,” he wrote.  Ereditato added that, “External tensions do not take long to transfer to the inside of a social system comprising over 150 people,” in the OPERA project.

“In my role as project coordinator, I have done everything within my power to dissipate the tensions within the project. However, when it became clear to me that tensions had gone beyond a critical threshold and turned into open criticism, I felt that the time had come for me to tender my resignation in order to foster a new, more widely shared consensus,” Ereditato said in his statement.

He told LiveScience, he was referring to “some tension within the collaboration, understandable for the broad interest on OPERA from colleagues and general public.”

But just because Ereditato has stepped down from his chairmanship, he hasn’t stepped out of academia and research. “I am still a member of OPERA, for which I lead a group of 15 physicists and students from Bern,” Ereditato said. “I am director of the High Energy Physics Laboratory in Bern and conduct other experiments in [the] USA, CERN and Japan.”

Follow LiveScience for the latest in science news and discoveries on Twitter @livescience and on Facebook.

View the original article here

Gene mapping for everyone? Study says not so fast


WASHINGTON (AP) — Gene scans for everyone? Not so fast. New research suggests that for the average person, decoding your own DNA may not turn out to be a really useful crystal ball for future health.

Today, scientists map entire genomes mostly for research, as they study which genetic mutations play a role in different diseases. Or they use it to try to diagnose mystery illnesses that plague families. It’s different from getting a genetic test to see if you carry, say, a particular cancer-causing gene.

But as genome mapping gets faster and cheaper, scientists and consumers have wondered about possible broader use: Would finding all the glitches hidden in your DNA predict which diseases you’ll face decades later?

Johns Hopkins University developed a model using registries of thousands of identical twins, who despite their shared genes can develop different diseases. They examined 24 ailments, including different types of cancer, heart disease, diabetes and Alzheimer’s.

Under best-case scenarios, most people would be told they had a somewhat increased risk of at least one disease, said Dr. Bert Vogelstein, a Hopkins cancer geneticist and the study’s senior author.

But a negative test for most of the rest of the diseases doesn’t mean you won’t get them. It just means that you’re at no more risk than the general population. Those are the findings Vogelstein’s team reported Monday in the journal Science Translational Medicine. Why? Cancer, for example, typically doesn’t result from inherited genes but from mutations that can form anytime, Vogelstein explained. Many other common diseases are influenced by lifestyle and environment — so you’d still have to eat well, exercise and take the other usual precautions.

The study examined just one possible future use of genome mapping. It doesn’t mean there aren’t other benefits from the effort.

Make no mistake: This technology does have huge promise for customizing care for certain people, especially children with otherwise undiagnosed illnesses, said Dr. James Lupski of Baylor College of Medicine, who wasn’t involved in Monday’s study.

Last year, Baylor researchers reported one of the first examples of genome mapping directly benefiting a patient. It found a mutation that pointed to the right treatment for a 14-year-old girl’s baffling trouble breathing.

But even if finding a genetic explanation doesn’t lead to treatment, knowing whether it was inherited can help parents decide whether to chance having another baby, Lupski added.

“There are families where this can be transformative,” said Lupski. He had his own genome mapped to identify the cause of a rare nerve disorder.

View the original article here

Stem Cell Therapy Could Boost Kidney Transplant Success: Study


TUESDAY, March 20 (HealthDay News) — A novel technique that uses a kidney transplant recipient’s own stem cells may someday replace or reduce the initial use of anti-rejection medications, new research suggests.

Six months after receiving a kidney transplant, only about 8 percent of people given their own mesenchymal stem cells experienced rejection compared with almost 22 percent of people on the standard anti-rejection drugs, according to the study.

“Mesenchymal stem cells are stem cells that can be differentiated into a variety of cells,” explained Dr. Camillo Ricordi, study senior author and director of the Cell Transplant Center and Diabetes Research Institute at the University of Miami Miller School of Medicine.

“If you infuse mesenchymal stem cells at the time of the transplant, you could replace the use of powerful anti-rejection drugs, and maybe replace immunosuppressants altogether,” he said. This technique could be used in the transplantation of islet cells (in the pancreas) for people with type 1 diabetes, and for other organ transplants, such as the liver, he added.

The people given their own stem cells also had improved kidney function earlier after transplant, Ricordi said.

Results of the study appear in the March 21 issue of the Journal of the American Medical Association.

One of the biggest remaining hurdles in organ transplantation remains the need for powerful anti-rejection and immune-suppressing medications after the transplant.

“Basically, the way we prevent kidney rejections is by putting you on very powerful anti-rejection drugs and immunosuppressive agents to prevent your cells from attacking the foreign organ,” said Dr. Robert Provenzano, chair of the department of nephrology, hypertension and transplantation at St. John Providence Health System in Detroit. “But, the current standard has some problems, like an increased risk of infections and the possibility of creating a cancer.”

The body’s immune system sends out surveillance cells to protect the body against foreign invaders, such as a bacteria, virus or, in this case, a new organ, Provenzano said. The current method of preventing these cells from attacking the new organ is essentially to destroy the surveillance cells. But mesenchymal cells can naturally suppress those surveillance cells so they don’t attack, he said.

To see if this suppression would be enough to prevent rejection, Ricordi and his colleagues, including researchers from Xiamen University in China, recruited 159 people with serious kidney disease who were on dialysis. They ranged in age from 18 to 61.

The study participants all had medically well-matched relatives willing to donate a kidney for transplant.

Each was randomly assigned to receive one of three treatments after transplant. One group got standard treatment with anti-rejection medication (induction therapy) and immune-suppressing medication known as calcineurin inhibitors (CNIs). Another group was infused with their own stem cells and the standard dose of CNIs, while the final group received stem cells plus a lower dose of CNIs (80 percent of the standard dose).

Survival rates for the patients and their new kidney were similar for all three groups at 13 to 30 months, the study found.

But before that, at six months, nearly 21.6 percent of those on standard therapy experienced rejection, compared with 7.5 percent of the stem cell plus standard CNIs, and 7.7 percent in the stem cell plus low-dose CNIs.

Both groups who received stem cells recovered kidney function faster than those on standard therapy. And at one year, the researchers found that the risk of opportunistic infections was reduced by nearly 60 percent in those who got the stem cell treatment.

Provenzano expressed enthusiasm for the new procedure. “I see this as the continued evolution of transplant medicine. It’s very exciting to be able to use your own natural cells instead of more toxic medications,” he said. He added that more studies are needed to confirm these findings and study long-term effects, but said “the data here appears promising.”

Some experts are less impressed. “This is a novel technique, but I don’t think it would be regarded as a significant step forward. It was only significant at six months,” said Dr. Glyn Morgan, the associate director of transplantation at NYU Langone Medical Center in New York City. And, he added, “It’s only a change in the induction protocol. Primary immunosuppressant agents are still used long term.”

Other researchers have also been testing the use of stem cells in transplants. The March 7 issue of Science Translational Medicine reported on an attempt to transfer stem cells from the donor to the transplant recipient before transplant, in an attempt to create a hybrid immune system that would accept the new organ. Five of eight patients studied haven’t needed medications to suppress their immune systems, according to the study.

Ricordi said perhaps a combination of stem cell therapies might lead to even more effective immune suppression.

More information

Learn more about the immune-suppressing medications used after a kidney transplant from the National Kidney Foundation.

View the original article here

Cancer gene mutation more complex than previously thought -study


LONDON (Reuters) – Taking a sample or biopsy from just one part of a tumour might not give a full picture of its genetic diversity and may explain why doctors, despite using genetically targeted drugs, are often unable to save patients whose cancer has spread, scientists said.

A study by British researchers found there are more genetic differences than similarities between biopsies taken from separate areas of the same tumour, and yet further gene differences in samples taken from secondary tumours.

That might help explain why, despite recent development of a wave of highly targeted drugs designed to tackle cancers of specific genetic types, the prognosis remains poor for many patients with so-called solid-tumour disease like breast, lung, or kidney cancer that has spread to others parts of the body.

But the researchers, whose study was partly funded by charity Cancer Research UK and published in the New England Journal of Medicine, said it also pointed to a way forward.

The team carried out the first ever genome-wide analysis of the genetic changes or faults in different regions of the same tumour.

They looked at four patients with cancer in their kidneys, taking samples from different regions of the primary tumour and also from other organs where the tumour had spread.

They found that the majority of gene faults, around two-thirds, were not the same in one sample as in another, even when the biopsies were taken from the same tumour.

Samples taken from secondary tumours – which are a result of the disease spreading to other parts of the body – had yet more different genetic faults, suggesting that basing treatment decisions on just one primary tumour sample is not sufficient.

“We’ve known for some time that tumours are a patchwork of faults, but this is the first time we’ve been able to use cutting-edge genome sequencing technology to map out the genetic landscape of a tumour in such exquisite detail,” said Charles Swanton, of University College London’s cancer institute, who led the study and presented its results at a briefing in London on Tuesday.

He said they had uncovered “an extraordinary amount of diversity” at a genetic level both within tumours and within a single patient, with more differences between biopsies from the same tumour than similarities.

“The next step will be to understand what’s driving this diversity in different cancers and identify key driver mutations that are common throughout all parts of a tumour,” Swanton said.

PERSONALISED MEDICINE

Genetic profiling of patients and their tumours has become more common in cancer treatment in wealthy countries as drug companies develop new generations of so-called “personalised medicines” that target cancers with specific genetic features.

Roche’s blockbuster breast cancer drug Herceptin is designed to treat only women who make too much of the HER2 protein, for example, while Novartis’s Afinitor targets mTOR, a protein that acts as an important regulator of tumour cell division, blood vessel growth and cell metabolism.

James Larkin, an oncologist at London’s Royal Marsden Hospital who also worked on the study, said the findings suggest the reality of personalised cancer treatment is far more complex than previously thought.

“The molecular changes that drive the growth of the cancer once it has spread may be different from those that drive the growth of the primary tumour,” he said.

The researchers compared genetic faults in various tumour samples taken from the four patients.

They found 118 different mutations – 40 of which were “ubiquitous mutations” found in all biopsies, 53 “shared mutations” that were found in most but not all biopsies, and 25 “private mutations” only found in a single sample.

By analysing where the shared mutations were in relation to the whole tumour, the researchers were able to trace the origins of certain subtypes of cancer cells back to what they called key “driver mutations.” This allowed them to create a map of how the pattern of faults might have evolved over time.

Swanton likened the findings to a tree, in which the trunk is the primary tumour and the branches the secondary tumours from the cancer’s spread.

While he stressed the results would need to be replicated with larger numbers of patients and in different types of cancer, he said these early indications showed “the importance of targeting common mutations found in the trunk of the tree as opposed to those found in the branches.”

“It may also explain why surgery to remove the primary kidney tumour can improve survival,” he added, since cutting out a tumour reduces the risk that cells resistant to drug treatment could go on to re-grow the tumour or spread elsewhere.

(Reporting by Kate Kelland; Editing by Ben Hirschler and Alessandra Rizzo)

View the original article here

Personal Gene Mapping Has Limits, Study Says


MONDAY, April 2 (HealthDay News) — Many people have pinned their hopes on human genome scans as the cornerstone of the rapidly emerging field of personalized medicine, able to predict the future health of individuals.

But there may be limits to what information whole genome sequencing can provide, according to new research slated for presentation Monday at the American Association for Cancer Research annual meeting in Chicago. The study will be simultaneously published online in Science Translational Medicine.

“In most cases, genome sequencing is not going to tell people what disease they’re going to get or die from. It can be valuable in telling what diseases they have an excess risk for,” said study co-author Dr. Bert Vogelstein, director of the Ludwig Center for Cancer Genetics and Therapeutics at Johns Hopkins University in Baltimore.

“Genome sequencing is not going to be the dominant component of patient care,” he added. “It will not be a substitute for preventive medicine strategies incorporating routine check-ups, exercise, physical status, lifestyle.”

The costs of whole genome sequencing are plummeting, making the test more accessible to more people, yet the ability of the test to provide useful information to patients has not been studied quantitatively, Vogelstein said.

The authors used data on identical twins in registries in Sweden, Denmark, Finland and Norway, as well as a U.S. registry of World War II military veteran twins, to look at genetic risk for 24 common diseases including diabetes, Alzheimer’s and breast cancer.

The researchers calculated that genetic sequencing would reveal a predisposition to at least one disease in 90 percent of the twins studied.

But that’s only predisposition, not whether you actually fall ill or not. The actual risk of getting one of these conditions would be no different from that of the general population, the authors noted.

The analysis also concluded that most individuals would receive negative test results for 23 of the 24 diseases but, again, this hypothetical information would not necessarily predict the future. Even with a negative test result, the risk for developing most of the diseases for which one tested negative would still be 50 percent to 80 percent of that in the general population.

To put the results in context: 2 percent of women who undergo whole genome tests will likely get a positive result for ovarian cancer risk, explained Vogelstein, who is also an investigator at the Howard Hughes Medical Institute, in Chevy Chase, Md.

That puts their overall risk of developing a tumor in their lifetime at 10 percent.

And the 98 percent of women who get a negative result don’t necessarily get a “get-out-of-jail-free pass” as they still harbor the same risk as the general population, Vogelstein said.

If it comes down to a choice between spending money on a genome test and spending it on health measures such as regular check-ups and joining a gym, it might be wise to go with the latter, he said.

“If I spend it on a gym membership, that will definitely decrease my risk for ovarian cancer,” Vogelstein said.

On the other hand, a genetic test might seem prudent for someone with a family history of a specific disease.

Commenting on the study, Dr. Marc Williams, vice president of clinical genetics for the American College of Medical Genetics and Genomics in Salt Lake City, said: “There’s certainly some promise in this type of testing but we’re still trying to sort out what are the best situations in which to apply this type of whole genome technology.”

Williams pointed out that “if we broadly apply it without thinking about the clinical context — why we are doing the test, what we hope to learn — then we could get into a lot of trouble in terms of coming up with a lot of information we don’t know what to do with.”

In the end, though, said study author Vogelstein, it comes down to an individual decision.

More information

The Human Genome Project has more on genetic sequencing.

View the original article here

Gene mapping for everyone? Study says not so fast


WASHINGTON (AP) — Gene scans for everyone? Not so fast. New research suggests that for the average person, decoding your own DNA may not turn out to be a really useful crystal ball for future health.

Today, scientists map entire genomes mostly for research, as they study which genetic mutations play a role in different diseases. Or they use it to try to diagnose mystery illnesses that plague families. It’s different from getting a genetic test to see if you carry, say, a particular cancer-causing gene.

But as genome mapping gets faster and cheaper, scientists and consumers have wondered about possible broader use: Would finding all the glitches hidden in your DNA predict which diseases you’ll face decades later?

Johns Hopkins University developed a model using registries of thousands of identical twins, who despite their shared genes can develop different diseases. They examined 24 ailments, including different types of cancer, heart disease, diabetes and Alzheimer’s.

Under best-case scenarios, most people would be told they had a somewhat increased risk of at least one disease, said Dr. Bert Vogelstein, a Hopkins cancer geneticist and the study’s senior author.

But a negative test for most of the rest of the diseases doesn’t mean you won’t get them. It just means that you’re at no more risk than the general population. Those are the findings Vogelstein’s team reported Monday in the journal Science Translational Medicine. Why? Cancer, for example, typically doesn’t result from inherited genes but from mutations that can form anytime, Vogelstein explained. Many other common diseases are influenced by lifestyle and environment — so you’d still have to eat well, exercise and take the other usual precautions.

The study examined just one possible future use of genome mapping. It doesn’t mean there aren’t other benefits from the effort.

Make no mistake: This technology does have huge promise for customizing care for certain people, especially children with otherwise undiagnosed illnesses, said Dr. James Lupski of Baylor College of Medicine, who wasn’t involved in Monday’s study.

Last year, Baylor researchers reported one of the first examples of genome mapping directly benefiting a patient. It found a mutation that pointed to the right treatment for a 14-year-old girl’s baffling trouble breathing.

But even if finding a genetic explanation doesn’t lead to treatment, knowing whether it was inherited can help parents decide whether to chance having another baby, Lupski added.

“There are families where this can be transformative,” said Lupski. He had his own genome mapped to identify the cause of a rare nerve disorder.

View the original article here